LOGIQA Data Browser

Organism

Protocol

Sample

Restriction enzyme Hi-C specific.

Target molecule ChiA-PET specific.

Author

Abstract

Paired-end tags / Reads

Hi-C/ChIA-PET
4C

Resolution

Series

Interaction map

No experiment selected. Click a point in the chart above or a button in the table below to select the experiment.

Gene

Gene surrounding distance

Genomic coord. interval

Visualisation

Heatmap scale limit

Resolution

Form

Select a gene, or enter a location (e.g. chr10:10000000-30000000, chr1:3.5e7-4e7), and select a mode of visualisation.
When selecting a gene, the start/end positions are extended.

Gene

Genomic coord. interval

Select a gene, enter a location (e.g. chr3L:10000000-12000000), or click the Bait/viewpoint button to select the region of the amplified library's viewpoint. The region must be between 10,000 bp and 1,000,000 bp long.

Click the sign to expand a row and display more information on the experiment.
Click the button to select the corresponding experiment to be explored.

		Organism	Protocol	Sample	PET / TMR	QC value	Score (5kb)

LOGIQA

Long-range genome interactions quality assessment

Interaction map